Developer Network Hacked

The Alanaktion Developer Network was hacked today, not causing any major issues, simply adding a tracker script to every single PHP file on the entire server (over 3,000 that I've fixed so far...) so Google Chrome will warn you about it, but the site will be completely restored within the week...  It looks as if either GoDaddy was hacked completely (unlikely) or my FTP/WEBDAV service was hacked.  I'll be upgrading the security on all the login pages within the developer network, more carefully scanning uploaded files, and validating upload locations.